|
Chromosome
III
|
CARC1 and
CARC2 |
|
|
|
|
|
|
|
|
|
|
Name
|
Sequence |
SGD
Position
|
Midpoint
|
Pcr product
|
|
SL-LEU-R17F
|
CGCTAAAGACAGCAATCCCTTACG |
97265
|
97504.5
|
479
|
|
SL-LEU-R17B
|
CATCATACACACCGACTACCCTTCT |
97744
|
|
|
|
SL-LEU-R18F
|
GAAGGGTAGTCGGTGTGTATGATGT |
97721
|
97835.5
|
229
|
|
SL-LEU-R18B
|
GCAATGACGCTCCACTTTCAACT |
97950
|
|
|
|
SL-LEU-R19F
|
CCTAAGTTGAAAGTGGAGCGTCAT |
97924
|
98010.5
|
173
|
|
SL-LEU-R19B
|
AGCCTTCGTAATCAAGTCAGCAAC |
98097
|
|
|
|
SL-LEU-R20F
|
GTTGCTGACTTGATTACGAAGGCT |
98074
|
98304.5
|
461
|
|
SL-LEU-R20B
|
TGTTGAAGGGTGCTTGACCTCT |
98535
|
|
|
|
SL-LEU-R21F
|
CCTTCAACAGACGAACATAGGGCT |
98527
|
98701.5
|
349
|
|
SL-LEU-R21B
|
GGCTTGCTCTTGCTTTTACTTCCA |
98876
|
|
|
|
SL-LEU-R22F
|
AGACCAAGACAAACGCCTCTAAAG |
98762
|
98940
|
356
|
|
SL-LEU-R22B
|
CGCCATTTCCAACATCAGGTG |
99118
|
|
|
|
SL-LEU-R23F
|
AACCACCTGATGTTGGAAATGG |
99095
|
99270.5
|
351
|
|
SL-LEU-R23B
|
TCCCCAGCCGATGTTGTAGAA |
99446
|
|
|
|
SL-LEU-R24F
|
TTCTACAACATCGGCTGGGGACCA |
99426
|
99578.5
|
305
|
|
SL-LEU-R24B
|
TGTGGAGAGAGTTTCTGCGTCAA |
99731
|
|
|
|
SL-LEU-R25F
|
TTGACGCAGAAACTCTCTCCACA |
99709
|
99901
|
384
|
|
SL-LEU-R25B
|
TTGCCGCATCTTCCTCAGTATT |
100093
|
|
|
|
SL-LEU-R26F
|
CAATACTGAGGAAGATGCGGCAAT |
100071
|
100217.5
|
293
|
|
SL-LEU-R26B
|
AACTTTGAATGCTGGGGGCT |
100364
|
|
|
|
SL-LEU-R27F
|
GAAGCCCCCAGCATTCAAAG |
100344
|
100502
|
316
|
|
SL-LEU-R27B
|
CGCTACTCAACTTATCGTCTGTGC |
100660
|
|
|
|
SL-LEU-R28F
|
CACAGACGATAAGTTGAGTAGCGGT |
100638
|
100810.5
|
345
|
|
SL-LEU-R28B
|
CTCTGGCGTCAATGCTTTAGTTCT |
100983
|
|
|
|
SL-LEU-R29F
|
AGGAGAACTAAAGCATTGACGCC |
100957
|
101164.5
|
415
|
|
SL-LEU-R29B
|
ATTGCCCCCGATGGAACCCCTATT |
101372
|
|
|
|
SL-LEU-R30F
|
TCAATAGGGGTTCCATCGGG |
101347
|
101446.5
|
199
|
|
SL-LEU-R30B
|
AGAAAACGGTCTCCATTCCAGG |
101546
|
|
|
|
SL-LEU-R31F
|
CCTGGAATGGAGACCGTTTTCT |
101525
|
101637
|
224
|
|
SL-LEU-R31B
|
GGGTTGTGCTATTGTCTTTATGCC |
101749
|
|
|
|
SL-LEU-R32F
|
AAGACAATAGCACAACCCAGAGGA |
101732
|
101899.5
|
335
|
|
SL-LEU-R32B
|
CCTAAGCACCAACCGAACCAT |
102067
|
|
|
|
SL-LEU-R33F
|
TGGTTCGGTTGGTGCTTAGGA |
102048
|
102211.5
|
327
|
|
SL-LEU-R33B
|
GCTGTCCACATTGATGAAACTGC |
102375
|
|
|
|
SL-LEU-L5F
|
TGTTGCGACATGCAAGAAGTTC |
89350
|
89521
|
342
|
|
SL-LEU-L5B
|
AATGACCTGGTTGACCTGGAGC |
89692
|
|
|
|
SL-LEU-L4F
|
GCTCCAGGTCAACCAGGTCATT |
89671
|
89865
|
388
|
|
SL-LEU-L4B
|
GACTTTCCTCCAATCACTTTTCCG |
90059
|
|
|
|
SL-LEU-L3F
|
GGAAAAGTGATTGGAGGAAAGTCG |
90037
|
90281
|
488
|
|
SL-LEU-L3B
|
CATTTGCGTCATCTTCTAACACCG |
90525
|
|
|
|
SL-LEU-L2F
|
GATGTGATGACAAAACCTCTTCCG |
90349
|
90458.5
|
219
|
|
SL-LEU-L2B
|
CCTTGCGTTTCAGCTTCCACTA |
90568
|
|
|
|
SL-LEU-L1F
|
GGAAGCTGAAACGCAAGGATTG |
90551
|
90778.5
|
455
|
|
SL-LEU-L1B
|
CCTGTGTGTTCTCGTTATGTTGAGG |
91006
|
|
|
|
SL-LEU-1F
|
CCTCAACATAACGAGAACACACAGG |
90982
|
91191.5
|
419
|
|
SL-LEU-1B
|
GAACCTTAATGGCTTCGGCTGT |
91401
|
|
|
|
SL-LEU-2F
|
ATCGTCGTTTTGCCAGGTGA |
91341
|
91559
|
436
|
|
SL-LEU-2B
|
CCATCGTCTTCCTTTCTCTTACCA |
91777
|
|
|
|
SL-LEU-3F
|
GGAAGACGATGGTGATGGTGTC |
91766
|
92002
|
472
|
|
SL-LEU-3B
|
AGATAGTGGCGATAGGGTTGACC |
92238
|
|
|
|
SL-LEU-4F
|
GAATAAGGTCAACCCTATCGCCA |
92210
|
92448
|
476
|
|
SL-LEU-4B
|
CCTAACTTTTTGTGTGGTGCCCTC |
92686
|
|
|
|
SL-LEU-R1F
|
GGGCACCACACAAAAAGTTAGG |
92665
|
92848.5
|
367
|
|
SL-LEU-R1B
|
TCGCATTATCCTCGGGTTCAG |
93032
|
|
|
|
SL-LEU-R2F
|
AGGCTGAACCCGAGGATAATGC |
93009
|
93123
|
228
|
|
SL-LEU-R2B
|
TTTGGTGAAGCTGCGAGATTG |
93237
|
|
|
|
SL-LEU-R3F
|
TCACCAAATCCCGCTACCAAT |
93230
|
93344
|
228
|
|
SL-LEU-R3B
|
ATACTGACGCCGCACAAGCCTA |
93458
|
|
|
|
SL-LEU-R4F
|
TTACCATAGGCTTGTGCGGCGT |
93431
|
93657.5
|
453
|
|
SL-LEU-R4B
|
CTCATTCCAACACTCACTCTTACGG |
93884
|
|
|
|
SL-LEU-R5F
|
CACAGCAGTATTTGTTTCCCAACC |
93838
|
93996.5
|
317
|
|
SL-LEU-R5B
|
GCAGGCGTGAAGTTAGACGACA |
94155
|
|
|
|
SL-LEU-R6F
|
CGTTTCCAGAGAGAAGTTGTCGTC |
94117
|
94302.5
|
371
|
|
SL-LEU-R6B
|
GGCACCCTATTACCCGCAAT |
94488
|
|
|
|
SL-LEU-R7F
|
GGTAGGTCACTATCAACTATTGCGG |
94452
|
94542
|
180
|
|
SL-LEU-R7B
|
CACGAGCAGGTAGCACACAAAACT |
94632
|
|
|
|
SL-LEU-R8F
|
CAGTTTTGTGTGCTACCTGCTCG |
94608
|
94756
|
296
|
|
SL-LEU-R8B
|
CTTTTCCCACCTTTCTTCCCAT |
94904
|
|
|
|
SL-LEU-R9F
|
GGAAGAAAGGTGGGAAAAGGGA |
94886
|
95119
|
466
|
|
SL-LEU-R9B
|
GAGGTCATCTACAAAGGTTATCGGG |
95352
|
|
|
|
SL-LEU-R10F
|
GGTCCCGATAACCTTTGTAGATGA |
95325
|
95536.5
|
423
|
|
SL-LEU-R10B
|
CATTCCGCACCCGAGTATGA |
95748
|
|
|
|
SL-LEU-R11F
|
TCATACTCGGGTGCGGAATG |
95728
|
95899.5
|
343
|
|
SL-LEU-R11B
|
GTCTTGGCAACTGGCAATCG |
96071
|
|
|
|
SL-LEU-R12F
|
GCGATTGCCAGTTGCCAAGA |
96051
|
96251.5
|
401
|
|
SL-LEU-R12B
|
TGAGTGAACACATTATCCGTCCAG |
96452
|
|
|
|
SL-LEU-R13F
|
CAGACTGGACGGATAATGTGTTCAC |
96425
|
96520
|
190
|
|
SL-LEU-R13B
|
CGGATAGTATTGCGAGTTGGAAGA |
96615
|
|
|
|
SL-LEU-R14F
|
TCTTCCAACTCGCAATACTATCCG |
96592
|
96683
|
182
|
|
SL-LEU-R14B
|
TCCAGCATAAGGGGGGTCATA |
96774
|
|
|
|
SL-LEU-R15F
|
TTGCGACTATGACCCCCCTT |
96747
|
96849.5
|
205
|
|
SL-LEU-R15B
|
CACCCAGATGGAATACCAACCTAT |
96952
|
|
|
|
SL-LEU-R16F
|
GGTTGGTATTCCATCTGGGTGAA |
96932
|
97110.5
|
357
|
|
SL-LEU-R16B
|
CCGTAAGGGATTGCTGTCTTTAGC |
97289
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Chromosome
III
|
CARC5
and CARC6 |
|
|
|
|
|
|
|
|
|
|
Name
|
Sequence |
SGD
Position
|
Midpoint
|
|
|
SL-3E1F
|
TGTGCGTATGCCCCATCAA |
316139
|
316309
|
340
|
|
SL-3E1B
|
ACCTGTCTCCAAACCTACCCTCA |
316479
|
|
|
|
SL-3E2F
|
TAGCAGTTCCATCCGCCCTTGA |
315128
|
315306
|
356
|
|
SL-3E2B
|
TCTTGTTCTCTACCACCTTCGTCAG |
315484
|
|
|
|
SL-3E3F
|
CTTTTTACGAGGCAGGTGGAAA |
314055
|
314245.5
|
381
|
|
SL-3E3B
|
ACAACCCAAGCAGGTGTATCAGAT |
314436
|
|
|
|
SL-3E4F
|
GCCAATACCGCTATGTCCCAA |
313303
|
313468.5
|
331
|
|
SL-3E4B
|
CATTCCGCCTGCCTAACCAT |
313634
|
|
|
|
SL-3E5F
|
CAAGGGAACATTTTAGAGAGTCGC |
312751
|
312898
|
294
|
|
SL-3E5B
|
TGGGAACAGTTTGGTAAGCACC |
313045
|
|
|
|
SL-3E6F
|
CGACTCTTCTACCGTCACTCATCG |
311561
|
311749
|
376
|
|
SL-3E6B
|
GCGAAATACATCCAGGAGGCATA |
311937
|
|
|
|
SL-3E7F
|
GTCGTTTGCTCATCATCTTTGTCG |
309807
|
309952.5
|
291
|
|
SL-3E7B
|
CGTCTCCGCTTTCCATCCTTGTA |
310098
|
|
|
|
SL-3E8F
|
CAAGGAAGAGTTGAAGGGCGA |
308800
|
308955
|
310
|
|
SL-3E8B
|
CTTTGCGTTGGAAATACCGATG |
309110
|
|
|
|
SL-3E9F
|
TCCAGTGCTCTATCTAAGGACGGTA |
308121
|
308352
|
462
|
|
SL-3E9B
|
TTACTCTGACTTGTCGCTCGCAT |
308583
|
|
|
|
SL-3E10F
|
ACCAAGGCATTCGCCGAGAGT
|
307212
|
307431
|
438
|
|
SL-3E10B
|
CAGACGCTCATTTAGCACCTCAC |
307650
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Chromosome
III
|
CARC3
and CARC4 |
|
|
|
|
|
|
|
|
|
|
Name
|
Sequence |
SGD
Position
|
Midpoint
|
|
|
SL-HMR-1F
|
CACCACAAAGGTTTTTTCAGGG |
291060
|
291272
|
424
|
|
SL-HMR-1B
|
CATCACCAATCCTTGCATTTCG |
291484
|
|
|
|
SL-HMR-2F
|
GGAAACGAAATGCAAGGATTGGTG |
291479
|
291705.5
|
453
|
|
SL-HMR-2B
|
GGGTTATCACGTTCAACAAGGAAC |
291932
|
|
|
|
SL-HMR-3F
|
GTTCCTTGTTGAACGTGATAACCC |
291909
|
292021
|
224
|
|
SL-HMR-3B
|
TGACGTAGTGGATTACGATCTAGCC |
292133
|
|
|
|
SL-HMR-4F
|
GGCTAGATCGTAATCCACTACGTCA |
292133
|
292207
|
148
|
|
SL-HMR-4B
|
TGGGGACATCATGTATAACAGCG |
292281
|
|
|
|
SL-HMR-5F
|
TCCTCGCACTATCGCTGTTATACA |
292269
|
292515.5
|
493
|
|
SL-HMR-5B
|
AACTTGGACGGGGATCGTTC |
292762
|
|
|
|
SL-HMR-6F
|
CATAAAATACGAACGATCCCCGTC |
292752
|
292914.5
|
325
|
|
SL-HMR-6B
|
CAATCAACCCTCTCCTCAGACACTA |
293077
|
|
|
|
SL-HMR-7F
|
CAAGCACGGGCATTTTTAGAAC |
294119
|
294340.5
|
443
|
|
SL-HMR-7B
|
ACAAGAGCAAGACGATGGGGAG |
294562
|
|
|
|
SL-HMR-8F
|
AGTTAGAGAAAGCTGGATGCAAGG |
295104
|
295330
|
452
|
|
SL-HMR-8B
|
GGGTGTCACCGAATAACGTGAT |
295556
|
|
|
|
SL-HMR-9F
|
GCGTCCATCGTCATCTGAAAAA |
295595
|
295769.5
|
349
|
|
SL-HMR-9B
|
TGCGTATTCCTATGTTGGTGGC |
295944
|
|
|
|
SL-HMR-10F
|
GCCACCAACATAGGAATACGCA |
295944
|
296191
|
494
|
|
SL-HMR-10B
|
CTTCCCGCTACAAAGTTGTGCT |
296438
|
|
|
|
SL-HMR-11F
|
AAAGCACAACTTTGTAGCGGGA |
296436
|
296565.5
|
259
|
|
SL-HMR-11B
|
CAGAAATGATGCAGTGGCGATA |
296695
|
|
|
|
SL-HMR-12F
|
ATCGCCACTGCATCATTTCTG |
296696
|
296869.5
|
347
|
|
SL-HMR-12B
|
CAGTCAGACAGGTCGATCAAAGTTG |
297043
|
|
|
|
SL-HMR-13F
|
TCAAATCCCATCTTACCAGTCCAG |
297154
|
297250.5
|
193
|
|
SL-HMR-13B
|
ATCGGTTCTGTAGTAGGCGTCG |
297347
|
|
|
|
|
|
|
|
|
|
SL-HMR-1L2F
|
CTTCAGCAATCCCAAAGTTAGCAG |
289215
|
289380
|
330
|
|
SL-HMR-1L2B
|
GTTTCTCCAAGTCAGGACACGG |
289545
|
|
|
|
SL-HMR-1L1F
|
GCCACTTCACACATTATGCCTTG |
289934
|
290175.5
|
483
|
|
SL-HMR-1L1B
|
GTAAAAGAAAGCAACTCCCGTCAC |
290417
|
|
|
|
SL-HMR-4.1B
|
GTACACGCTTTGGGGACATCAT |
292292
|
|
|
|
SL-HMR-8.1F
|
GAAAGCTGGATGCAAGGATTGA |
295111
|
295353
|
484
|
|
SL-HMR-8.1B
|
TTTTTCAGATGACGATGGACGC |
295595
|
|
|
|
SL-HMR-8.2F
|
GGTTCAAATCCGATTGGAAGC |
295528
|
295639
|
222
|
|
SL-HMR-8.2B
|
CGCACTGAATGTCATCAAAAGGC |
295750
|
|
|
|
SL-HMR-10.1F
|
GATGACATTCAGTGCGTCACGAC |
295757
|
295850.5
|
187
|
|
SL-HMR-10.1B
|
TGCGTATTCCTATGTTGGTGGC |
295944
|
|
|
|
SL-HMR-10.2F
|
GCCAACAATGGAATCTCATTACCC |
295889
|
296162.5
|
547
|
|
SL-HMR-10.2B
|
TCCCGCTACAAAGTTGTGCTTT |
296436
|
|
|
|
SL-HMR-14F
|
CGGTTGCTGACGCTTCACTACTA |
297413
|
297489.5
|
153
|
|
SL-HMR-14B
|
CGTTGATGTTTGGTTTCTCTGGGT |
297566
|
|
|
|
SL-HMR-15F
|
TGTCACCATAACCAGGATACCACC |
298035
|
298176
|
282
|
|
SL-HMR-15B
|
AGAGTTTCCAACGCAGCCCTA |
298317
|
|
|
|
|
|
|
|
|
|
SL-HMR-4F
|
GGCTAGATCGTAATCCACTACGTCA |
292133
|
292212.5
|
159
|
|
SL-HMR-4.1B
|
GTACACGCTTTGGGGACATCAT |
292292
|
|
|
|
|
|
|
|
|
|
SL-HMR-8.2F
|
Many other
matches(tRNAs) |
|
|
|
|
SL-HMR-8.2B
|
No other exact
match |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Chromosome
III
|
CARC5
and CARC6 |
|
|
|
|
|
|
|
|
|
|
Name
|
Sequence |
SGD
Position
|
Midpoint
|
|
|
SL-3E1F
|
TGTGCGTATGCCCCATCAA |
316139
|
316309
|
340
|
|
SL-3E1B
|
ACCTGTCTCCAAACCTACCCTCA |
316479
|
|
|
|
SL-3E2F
|
TAGCAGTTCCATCCGCCCTTGA |
315128
|
315306
|
356
|
|
SL-3E2B
|
TCTTGTTCTCTACCACCTTCGTCAG |
315484
|
|
|
|
SL-3E3F
|
CTTTTTACGAGGCAGGTGGAAA |
314055
|
314245.5
|
381
|
|
SL-3E3B
|
ACAACCCAAGCAGGTGTATCAGAT |
314436
|
|
|
|
SL-3E4F
|
GCCAATACCGCTATGTCCCAA |
313303
|
313468.5
|
331
|
|
SL-3E4B
|
CATTCCGCCTGCCTAACCAT |
313634
|
|
|
|
SL-3E5F
|
CAAGGGAACATTTTAGAGAGTCGC |
312751
|
312898
|
294
|
|
SL-3E5B
|
TGGGAACAGTTTGGTAAGCACC |
313045
|
|
|
|
SL-3E6F
|
CGACTCTTCTACCGTCACTCATCG |
311561
|
311749
|
376
|
|
SL-3E6B
|
GCGAAATACATCCAGGAGGCATA |
311937
|
|
|
|
SL-3E7F
|
GTCGTTTGCTCATCATCTTTGTCG |
309807
|
309952.5
|
291
|
|
SL-3E7B
|
CGTCTCCGCTTTCCATCCTTGTA |
310098
|
|
|
|
SL-3E8F
|
CAAGGAAGAGTTGAAGGGCGA |
308800
|
308955
|
310
|
|
SL-3E8B
|
CTTTGCGTTGGAAATACCGATG |
309110
|
|
|
|
SL-3E9F
|
TCCAGTGCTCTATCTAAGGACGGTA |
308120
|
308351
|
462
|
|
SL-3E9B
|
TTACTCTGACTTGTCGCTCGCAT |
308582
|
|
|
|
SL-3E10F
|
ACCAAGCATTCGCCGAGAGT |
307212
|
307430.5
|
437
|
|
SL-3E10B
|
CAGACGCTCATTTAGCACCTCAC |
307649
|
|
|
|
|
|
|
|
|
|
Chromosome
12
|
CARL1
and CARL2 CARL3-1 |
|
|
|
|
|
|
|
|
|
|
Name
|
Sequence |
SGD
Position
|
Midpoint
|
|
|
|
|
|
|
|
|
SL
146F
|
AACTCCACGATGCCCTTCCA |
439214
|
439339.5
|
251
|
|
SL
146B
|
TGTTCCTTCCGAGAAACTGGTAGAG |
439465
|
|
|
|
SL
145F
|
ACTCTACCAGTTTCTCGGAAGGAAC |
439440
|
439564
|
248
|
|
SL
145B
|
GGCAGTTGCGGGATTGTATCA |
439688
|
|
|
|
SL
144F
|
TGGAGCCTGGTTTGATACAATCC |
439656
|
439814
|
316
|
|
SL
144B
|
|